[bioontology-support] MONDO ontology submission 39 empty on bioontology? (http://data.bioontology.org/ontologies/MONDO/classes)

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[bioontology-support] MONDO ontology submission 39 empty on bioontology? (http://data.bioontology.org/ontologies/MONDO/classes)

Brian Walsh

Receiving 404 errors attempting to look up a MONDO class by id

{"errors":["Resource 'MONDO:0004992' not found in ontology MONDO submission 39"],"status":404}

When I examine


It looks like all pages are empty?


Thanks very much,

-Brian



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Re: [bioontology-support] MONDO ontology submission 39 empty on bioontology? (http://data.bioontology.org/ontologies/MONDO/classes)

jvendetti
Hello Brian,

Thanks for reporting that. I’ve entered an issue in our tracker so that we can have a look: https://github.com/ncbo/bioportal-project/issues/125.

Apologies for the inconvenience.

Jennifer


On Jun 4, 2019, at 10:30 AM, Brian Walsh <[hidden email]> wrote:


Receiving 404 errors attempting to look up a MONDO class by id

{"errors":["Resource 'MONDO:0004992' not found in ontology MONDO submission 39"],"status":404}

When I examine


It looks like all pages are empty?


Thanks very much,

-Brian


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[hidden email]
https://mailman.stanford.edu/mailman/listinfo/bioontology-support


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Re: [bioontology-support] MONDO ontology submission 39 empty on bioontology? (http://data.bioontology.org/ontologies/MONDO/classes)

jvendetti
Hi again Brian,

After some initial investigation, it’s apparent that our system is struggling to handle mondo.owl, and diagnosing / fixing the issue isn’t altogether trivial. I’ve uploaded the OBO version of MONDO (mondo.obo) until such time that we’re able to have a more in depth look at the issue. BioPortal processes mondo.obo w/out issue, so the classes are fully available from the UI and/or the REST endpoint, e.g.:




Jennifer



On Jun 4, 2019, at 1:20 PM, Jennifer Leigh Vendetti <[hidden email]> wrote:

Hello Brian,

Thanks for reporting that. I’ve entered an issue in our tracker so that we can have a look: https://github.com/ncbo/bioportal-project/issues/125.

Apologies for the inconvenience.

Jennifer


On Jun 4, 2019, at 10:30 AM, Brian Walsh <[hidden email]> wrote:


Receiving 404 errors attempting to look up a MONDO class by id

{"errors":["Resource 'MONDO:0004992' not found in ontology MONDO submission 39"],"status":404}

When I examine


It looks like all pages are empty?


Thanks very much,

-Brian


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[hidden email]
https://mailman.stanford.edu/mailman/listinfo/bioontology-support

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[hidden email]
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Re: [bioontology-support] MONDO ontology submission 39 empty on bioontology? (http://data.bioontology.org/ontologies/MONDO/classes)

Chris Mungall
Simon does the same for OLS, I expect it's the equivalence axioms

On Thu, Jun 6, 2019 at 3:20 PM Jennifer Leigh Vendetti <[hidden email]> wrote:
Hi again Brian,

After some initial investigation, it’s apparent that our system is struggling to handle mondo.owl, and diagnosing / fixing the issue isn’t altogether trivial. I’ve uploaded the OBO version of MONDO (mondo.obo) until such time that we’re able to have a more in depth look at the issue. BioPortal processes mondo.obo w/out issue, so the classes are fully available from the UI and/or the REST endpoint, e.g.:




Jennifer



On Jun 4, 2019, at 1:20 PM, Jennifer Leigh Vendetti <[hidden email]> wrote:

Hello Brian,

Thanks for reporting that. I’ve entered an issue in our tracker so that we can have a look: https://github.com/ncbo/bioportal-project/issues/125.

Apologies for the inconvenience.

Jennifer


On Jun 4, 2019, at 10:30 AM, Brian Walsh <[hidden email]> wrote:


Receiving 404 errors attempting to look up a MONDO class by id

{"errors":["Resource 'MONDO:0004992' not found in ontology MONDO submission 39"],"status":404}

When I examine


It looks like all pages are empty?


Thanks very much,

-Brian


_______________________________________________
bioontology-support mailing list
[hidden email]
https://mailman.stanford.edu/mailman/listinfo/bioontology-support

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[hidden email]
https://mailman.stanford.edu/mailman/listinfo/bioontology-support


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